cv
Basics
| Name | Ruhi Soni |
| r.soni@student.vu.nl | |
| Summary | Bioinformatician-in-training with a background in molecular biology and a soft spot for scientific storytelling. |
Work
-
2024.09 - 2025.07 Netherlands
Bioinformatics Intern
Cyclomics
Investigating features of cell-free DNA (end motifs, fragment length, copy number alterations) as biomarkers in estimating tumor fraction
- Python
- sklearn
- non-negative matrix factorization (NMF)
- long-read sequencing analysis
- Oxford Nanopore Technologies
- cfDNA and ctDNA
- liquid biopsies
- Git
- CLI
-
2024.09 - 2025.02 Netherlands
Teaching Assistant
VU Amsterdam
Assisted students in understand core bioinformatics courses: Fundamentals of Bioinformatics, Algorithms in Sequence Analysis, Principles of Bioinformatics (minor)
- SNP impact prediction
- ROC-AUCs
- ClinVar
- Hidden Markov Models
- Expectation-Maximization
- dynamic programming
- Burrows-Wheeler Alignment
-
2021.05 - 2023.02 India
Business Journalist, North American Natural Resources
Reuters
Reported breaking news stories and trends in the U.S. and Canadian public companies
- digital journalism
- interviewing techniques
- good standard practices in writing, editing and publishing
- Refinitiv Eikon
- Datawrapper
-
2020.10 - 2020.12 India (remote)
Bioinformatics Student Intern
Genomiki Solutions
Variant calling analysis of COVID-19 genomes from five countries as part of BSc capstone project
- NCBI SRA
- BWA
- samtools
- bcftools
- SnpEff
- VEP
-
2020.01 - 2019.09 India
Intern Journalist, U.S. Health and Pharmaceuticals
Reuters
Reported on the U.S. pharmaceutical and biotech industry, FDA regulatory decisions, clinical trials, and public health developments
- digital journalism
- written communication
- interviewing techniques
- good standard practices in editing and publishing
-
2018.07 - 2018.08 United Kingdom
Summer School Research Student
Imperial College London
Comparison of methods to improve CD3+/CD20+ co-expression in T-cells in vaccine production
- immunology
- flow cytometry
- ELISA
- biostatistical analysis
Education
-
2023.09 - 2025.08 Netherlands
MSc Bioinformatics and Systems Biology
Vrije Universiteit Amsterdam & University of Amsterdam (VU & UvA)
- Algorithms in Sequence Analysis
- Biosystems Data Analysis
- Scientific Machine Learning
- Structural Bioinformatics
- Computational Biology
- Statistics with R
- Bioinformatics for Translational Medicine
- Quantitative Single-cell Biology
-
2016.09 - 2021.01 Hong Kong S.A.R.
BSc Molecular Biology and Biotechnology
University of Hong Kong (HKU)
- Biostatistics
- Principles of Biochemistry
- Healthcare Biotechnology
- Microbial Biology and Biotechnology
- Plant and Food Biotechnology
- Cell Biology and Technology
- 'Omics Technologies and Resources
- Genetics
- Immunology
Volunteer
-
2025.05 - 2025.05 Netherlands
Volunteer (various roles)
BioSB Conference 2025
Handled logistics, registration, audio-visual support, and venue set-up during the three-day scientific conference
Awards
- 2020.06
Mitacs Globalink Research Internship
Mitacs Canada
- 2017.06
HKSAR Government Reaching Out Award
Education Bureau of the Hong Kong S.A.R. Government
- 2018.06
Centenary Scholarship Fund
The University of Hong Kong (HKU)
Certificates
| Genomic Data Science (6-part specialization) | ||
| Johns Hopkins University | 2023-05-02 |
| Python for Everybody (5-part specialization) | ||
| University of Michigan | 2021-03-12 |
Publications
-
2026.01.01 Examining the Bioethics of India's COVID-19 Response Through Covaxin's Clinical Trials
Gujarat National Law University
Final draft of book chapter submitted to publisher. Awaiting publication.
-
2020.01.29 The 15-Year-Old Who Taught Me About Suicide
Asian Sentinel
Skills
| Programming & Scripting | |
| Python | |
| R | |
| Bash | |
| Unix/Linux CLI |
| Data Analysis & Visualization | |
| pandas | |
| NumPy | |
| matplotlib | |
| ggplot2 | |
| scikit-learn |
| Bioinformatics Tools | |
| fastp | |
| Trimmomatic | |
| BWA | |
| minimap2 | |
| samtools | |
| bcftools | |
| SnpEff | |
| Snakemake | |
| Nextflow |
| Reproducibility & Version Control | |
| Git | |
| GitHub | |
| Jupyter | |
| Quarto | |
| LaTeX | |
| Conda | |
| Docker | |
| SSH |
| Productivity & Collaboration | |
| Microsoft Office | |
| Google Workspace | |
| Slack | |
| Discord |
Languages
| English | |
| Native |
| Hindi | |
| Native |
| French | |
| Intermediate |
| Dutch | |
| Beginner |
| Urdu | |
| Fluent |
| Punjabi | |
| Intermediate |